Hello fellow GROMACS users! I've been having a heck of a time with the reformatting of a DNA molecule into a GROMACS-compatible format. I know that residues (bases) must be renamed to DTHR, etc., though it would be endlessly helpful if someone could please send me an example pdb or gmx file I can use as reference. Better yet, if anyone has a nifty program that will reformat a nucleic acid model into the GROMACS format, that would answer my prayers! The duplex I'm working with is only 21nt, so it's not insane to have to modify the file by hand...
Thanks in advance! Dave Crosby University of California, Irvine Dept of Pathology and Laboratory Medicine _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
