Dear Nicholas, great!!! I've needed a bit time for testing but this works fine. Many thanks for that script.
Thomas -- Thomas H. Schmidt, PhD student Computational Structural Biology Chair of Life Science Informatics, B-IT LIMES-Institute, University of Bonn Dahlmannstrasse 2, D-53113 Bonn, Germany Phone: +49-(0)228-2699 323 Fax: +49-(0)228-2699 341 http://www.csb.bit.uni-bonn.de On Mo, 2009-10-19 at 16:53 +0200, Nicolas Sapay wrote: > Hello Thomas, > > I have a tcl script in my personal script library that might do what you > want to do. I didn't use it for quite a while, but it was working well > as far as I remember. I think it has been adapted from a script > available on the VMD website, but I don't remember exactly its history. > It doesn't seem too difficult to understand. You should be able to > modify it for your own purpose, if needed. > > Cheers, > Nicolas > > > Thomas Schmidt a écrit : > > Dear Omer, > > > > many thanks for your answer, but your solution doesn't work for me. > > We have Protein-Lipid models in the CG scale. > > Only if I replace all atom names in the PDB file through "CA" I can use > > the "trace" drawing method, but get also wrong atoms connected to each > > other. For example CG Beads with low distances to each other, e.g. in > > coarse-grained benzene rings, were not connected. I guess that this > > method is distance dependent, too, but in another way. :-) > > > > Does anybody else have a solution (...to put GROMACS bond information > > into VMD)? > > > > Thomas _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php