Hi everyone, I was looking at calculation od dihedrals using g_angle. I did not understand what the output of this tool is, along the x-axis we have angle (in degrees) but what do we have along the y axis . Does y-axis show the fraction of dihedrals having that specific angle? It does seem so by adding all the fractions but i need to make sure.
Just to be sure that you know what i am talking about i first used make_ndx to make a group of 4 atoms (whose dihedral has to be calculated) . Then i used g_angle -f confout.gro -n index.ndx -type dihedral where index.ndx has the indices for all the relevant atoms stored in a group. Thank you, Amit
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