Ramachandran G wrote:
Thanks for your help.
I have tried the command

trjconv -f  traj.trr -s AFP-500ps.tpr -b 87001 -e 99000  -o test.gro

but nothing was written on output file(test.gro) and got the message

"WARNING no output, trajectory ended at 500"

Am i doing it right?


Obviously not. If your trajectory ended at 500 ps, then frames at 87001 and 99000 ps clearly don't exist.

-Justin

--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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