try the option -ignh, it will ignore the the hydrogen atoms in your
pdb file and generate the ones necessary to the force field you choose.
On Dec 15, 2009, at 9:52 AM, ashish pandey wrote:
Dear all,
my self ashish and i am trying to dynamics using gromacs.
i am new in these field. in the time of running Pdb2gmx to create .gro
file. i am geting these error.
Fatal error:
Atom HA in residue MET 1 not found in rtp entry with 9 atoms
please help me sortout these problem.
--
Ashish Pandey
NIPER India
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