sunny mishra wrote:
Dear All,
I have downloaded the 128 DPPC lipid molecules from Dr. Tielmen's
Website and I am trying to convert the Atomistic structure to CG
structure. For that I am using atom2cg script provided by the martini
folks but it doesn't convert the Atomistic structure to CG structure.
atom2cg script works well for converting the atomistic structure of
PROTEIN to CG structure of protein but for LIPIDS it doesn't work. Does
Right, because it's designed specifically for proteins.
anyone know how can I convert the 128 DPPC atomistic structure of lipids
to CG structure.
There is no need. On the MARTINI site, they offer several pre-equilibrated CG
lipid membranes, suitable topologies, etc.
-Justin
Best Regards,
Sunny
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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