greetings GMX users, When I use genbox command for filling solvent in CGMD simulation with Gromacs suit, I must use a larger van der Waals distance to avoid crashes. when I use default value (0.105nm), system will crash. Which distance is suitable for performing CGMD simulation. I used 0.15 or 0.2nm as distances. Are those OK? I have to switch back to the smaller radius afterward, Is it correct? if yes, How can I do it? I tried with editconf but could not.
Best regards, Rasoul
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