ashish pandey wrote:
I wan to make top fil fo my complex having membrane, protein and ion.
When I use x2top, I took
the following error:
x2top does not work for complex systems.
you will need to run pdb2gmx on the protein, and do manual work for the
lipids. check archives.
Can not find forcefield for atom OH2-12939 with 2 bonds
Can not find forcefield for atom OH2-10618 with 2 bonds
Can not find forcefield for atom OH2-10621 with 2 bonds
Can not find forcefield for atom OH2-10624 with 2 bonds
Can not find forcefield for atom OH2-10627 with 2 bonds
Can not find forcefield for atom OH2-10630 with 2 bonds
Can not find forcefield for atom OH2-10633 with 2 bonds
Can not find forcefield for atom OH2-10636 with 2 bonds
Can not find forcefield for atom OH2-10639 with 2 bonds
Can not find forcefield for atom OH2-10642 with 2 bonds
Can not find forcefield for atom OH2-10645 with 2 bonds
Can not find forcefield for atom OH2-10648 with 2 bonds
Can not find forcefield for atom OH2-10651 with 2 bonds
Can not find forcefield for atom OH2-10654 with 3 bonds
Can not find forcefield for atom H1-10655 with 2 bonds
Can not find forcefield for atom OH2-10657 with 2 bonds
Can not find forcefield for atom OH2-10660 with 2 bonds
Can not find forcefield for atom OH2-10663 with 2 bonds
Can not find forcefield for atom OH2-10666 with 2 bonds
Can not find forcefield for atom OH2-10669 with 2 bonds
Can not find forcefield for atom OH2-10672 with 2 bonds
Can not find forcefield for atom OH2-10675 with 2 bonds
Can not find forcefield for atom OH2-10678 with 2 bonds
Can not find forcefield for atom OH2-10681 with 2 bonds
Can not find forcefield for atom OH2-10684 with 2 bonds
Can not find forcefield for atom OH2-10687 with 2 bonds
Can not find forcefield for atom OH2-10690 with 2 bonds
Can not find forcefield for atom OH2-10693 with 2 bonds
Can not find forcefield for atom OH2-10696 with 2 bonds
Can not find forcefield for atom OH2-10699 with 2 bonds
Can not find forcefield for atom OH2-10702 with 2 bonds
Can not find forcefield for atom OH2-10705 with 2 bonds
Can not find forcefield for atom OH2-10708 with 2 bonds
Can not find forcefield for atom OH2-10711 with 2 bonds
Can not find forcefield for atom OH2-10714 with 2 bonds
Can not find forcefield for atom OH2-10717 with 2 bonds
Can not find forcefield for atom OH2-10720 with 2 bonds
Can not find forcefield for atom OH2-10723 with 2 bonds
Can not find forcefield for atom OH2-10726 with 2 bonds
Can not find forcefield for atom OH2-10729 with 2 bonds
Can not find forcefield for atom OH2-10732 with 2 bonds
Can not find forcefield for atom OH2-10735 with 2 bonds
Can not find forcefield for atom OH2-10738 with 2 bonds
Can not find forcefield for atom OH2-10741 with 2 bonds
Can not find forcefield for atom OH2-10744 with 2 bonds
Can not find forcefield for atom OH2-10747 with 2 bonds
Can not find forcefield for atom OH2-10750 with 2 bonds
Can not find forcefield for atom OH2-10753 with 2 bonds
Can not find forcefield for atom OH2-10756 with 2 bonds
Can not find forcefield for atom OH2-10759 with 2 bonds
Can not find forcefield for atom OH2-10762 with 2 bonds
Can not find forcefield for atom OH2-10765 with 2 bonds
Can not find forcefield for atom OH2-10768 with 2 bonds
Can not find forcefield for atom OH2-10771 with 2 bonds
Can not find forcefield for atom OH2-10774 with 2 bonds
Can not find forcefield for atom OH2-10777 with 2 bonds
Can not find forcefield for atom OH2-10780 with 2 bonds
Can not find forcefield for atom OH2-10783 with 2 bonds
Can not find forcefield for atom OH2-10786 with 2 bonds
Can not find forcefield for atom OH2-10789 with 2 bonds
Can not find forcefield for atom OH2-10792 with 2 bonds
Can not find forcefield for atom OH2-10795 with 2 bonds
Can not find forcefield for atom OH2-10798 with 2 bonds
Can not find forcefield for atom OH2-10801 with 2 bonds
Can not find forcefield for atom OH2-10804 with 2 bonds
Can not find forcefield for atom OH2-10807 with 2 bonds
Can not find forcefield for atom OH2-10810 with 2 bonds
Can not find forcefield for atom OH2-10813 with 2 bonds
Can not find forcefield for atom OH2-10816 with 2 bonds
Can not find forcefield for atom OH2-10819 with 2 bonds
Can not find forcefield for atom OH2-10822 with 2 bonds
Can not find forcefield for atom OH2-10825 with 2 bonds
Can not find forcefield for atom OH2-10828 with 2 bonds
Can not find forcefield for atom OH2-10831 with 2 bonds
Can not find forcefield for atom OH2-10834 with 2 bonds
Can not find forcefield for atom OH2-10837 with 2 bonds
Can not find forcefield for atom OH2-10840 with 2 bonds
Can not find forcefield for atom OH2-10843 with 2 bonds
Can not find forcefield for atom OH2-10846 with 2 bonds
Can not find forcefield for atom OH2-10849 with 2 bonds
Can not find forcefield for atom OH2-10852 with 2 bonds
Can not find forcefield for atom OH2-10855 with 2 bonds
Can not find forcefield for atom OH2-10858 with 2 bonds
Can not find forcefield for atom OH2-10861 with 2 bonds
Can not find forcefield for atom OH2-10864 with 2 bonds
Can not find forcefield for atom OH2-10867 with 2 bonds
Can not find forcefield for atom OH2-10870 with 2 bonds
Can not find forcefield for atom OH2-10873 with 2 bonds
Can not find forcefield for atom OH2-10876 with 2 bonds
Can not find forcefield for atom OH2-10879 with 2 bonds
Can not find forcefield for atom OH2-10882 with 2 bonds
Can not find forcefield for atom OH2-10885 with 2 bonds
Can not find forcefield for atom OH2-10888 with 2 bonds
Can not find forcefield for atom OH2-10891 with 2 bonds
Can not find forcefield for atom OH2-10894 with 2 bonds
Can not find forcefield for atom OH2-10897 with 2 bonds
Can not find forcefield for atom OH2-10900 with 2 bonds
Can not find forcefield for atom OH2-10903 with 2 bonds
Can not find forcefield for atom OH2-10906 with 2 bonds
Can not find forcefield for atom OH2-10909 with 2 bonds
Can not find forcefield for atom OH2-10912 with 2 bonds
Can not find forcefield for atom OH2-10915 with 2 bonds
Can not find forcefield for atom OH2-10918 with 2 bonds
Can not find forcefield for atom C11-10922 with 4 bonds
Can not find forcefield for atom C12-10923 with 4 bonds
Can not find forcefield for atom C13-10924 with 4 bonds
Can not find forcefield for atom C14-10925 with 4 bonds
Can not find forcefield for atom P1-10940 with 0 bonds
Can not find forcefield for atom O3-10941 with 0 bonds
Can not find forcefield for atom O4-10942 with 0 bonds
Can not find forcefield for atom O21-10950 with 2 bonds
Can not find forcefield for atom C21-10951 with 3 bonds
Can not find forcefield for atom O22-10952 with 0 bonds
Can not find forcefield for atom O31-10959 with 2 bonds
Can not find forcefield for atom C31-10960 with 2 bonds
Can not find forcefield for atom O32-10961 with 0 bonds
Can not find forcefield for atom C11-11056 with 4 bonds
Can not find forcefield for atom C12-11057 with 4 bonds
Can not find forcefield for atom C13-11058 with 4 bonds
Can not find forcefield for atom C14-11059 with 4 bonds
Can not find forcefield for atom P1-11074 with 0 bonds
Can not find forcefield for atom O3-11075 with 0 bonds
Can not find forcefield for atom O4-11076 with 0 bonds
Can not find forcefield for atom O21-11084 with 2 bonds
Can not find forcefield for atom C21-11085 with 2 bonds
Can not find forcefield for atom O22-11086 with 0 bonds
Can not find forcefield for atom C31-11094 with 1 bonds
Can not find forcefield for atom O32-11095 with 0 bonds
Can not find forcefield for atom C29-11117 with 3 bonds
Can not find forcefield for atom C210-11119 with 2 bonds
Can not find forcefield for atom H11Y-11172 with 0 bonds
Can not find forcefield for atom C11-11190 with 4 bonds
Can not find forcefield for atom C12-11191 with 4 bonds
Can not find forcefield for atom C13-11192 with 4 bonds
Can not find forcefield for atom C14-11193 with 4 bonds
Can not find forcefield for atom P1-11208 with 0 bonds
Can not find forcefield for atom O3-11209 with 0 bonds
Can not find forcefield for atom O4-11210 with 0 bonds
Can not find forcefield for atom O21-11218 with 2 bonds
Can not find forcefield for atom C21-11219 with 2 bonds
Can not find forcefield for atom O22-11220 with 0 bonds
Can not find forcefield for atom O31-11227 with 2 bonds
Can not find forcefield for atom C31-11228 with 3 bonds
Can not find forcefield for atom C11-11324 with 4 bonds
Can not find forcefield for atom C12-11325 with 4 bonds
Can not find forcefield for atom C13-11326 with 4 bonds
Can not find forcefield for atom C14-11327 with 4 bonds
Can not find forcefield for atom P1-11342 with 0 bonds
Can not find forcefield for atom O3-11343 with 1 bonds
Can not find forcefield for atom O4-11344 with 0 bonds
Can not find forcefield for atom C1-11347 with 5 bonds
Can not find forcefield for atom O21-11352 with 2 bonds
Can not find forcefield for atom C21-11353 with 2 bonds
Can not find forcefield for atom O22-11354 with 0 bonds
Can not find forcefield for atom O31-11361 with 2 bonds
Can not find forcefield for atom C31-11362 with 2 bonds
Can not find forcefield for atom O32-11363 with 0 bonds
Can not find forcefield for atom C29-11385 with 2 bonds
Can not find forcefield for atom C210-11387 with 2 bonds
Can not find forcefield for atom C11-11458 with 4 bonds
Can not find forcefield for atom C12-11459 with 4 bonds
Can not find forcefield for atom C13-11460 with 4 bonds
Can not find forcefield for atom C14-11461 with 4 bonds
Can not find forcefield for atom P1-11476 with 1 bonds
Can not find forcefield for atom O3-11477 with 0 bonds
Can not find forcefield for atom O4-11478 with 0 bonds
Can not find forcefield for atom O1-11479 with 2 bonds
Can not find forcefield for atom O21-11486 with 2 bonds
Can not find forcefield for atom C21-11487 with 2 bonds
Can not find forcefield for atom O22-11488 with 0 bonds
Can not find forcefield for atom O31-11495 with 2 bonds
Can not find forcefield for atom C31-11496 with 3 bonds
Can not find forcefield for atom C29-11519 with 2 bonds
Can not find forcefield for atom C210-11521 with 2 bonds
Can not find forcefield for atom C11-11592 with 6 bonds
Can not find forcefield for atom C12-11593 with 4 bonds
Can not find forcefield for atom C13-11594 with 4 bonds
Can not find forcefield for atom C14-11595 with 4 bonds
Can not find forcefield for atom H42-11605 with 2 bonds
Can not find forcefield for atom C15-11607 with 5 bonds
Can not find forcefield for atom P1-11610 with 1 bonds
Can not find forcefield for atom O3-11611 with 0 bonds
Can not find forcefield for atom O4-11612 with 0 bonds
Can not find forcefield for atom O1-11613 with 2 bonds
Can not find forcefield for atom O21-11620 with 2 bonds
Can not find forcefield for atom C21-11621 with 2 bonds
Can not find forcefield for atom O22-11622 with 0 bonds
Can not find forcefield for atom O31-11629 with 2 bonds
Can not find forcefield for atom C31-11630 with 2 bonds
Can not find forcefield for atom O32-11631 with 0 bonds
Can not find forcefield for atom C29-11653 with 2 bonds
Can not find forcefield for atom C210-11655 with 2 bonds
Can not find forcefield for atom H16R-11673 with 0 bonds
Can not find forcefield for atom C11-11726 with 4 bonds
Can not find forcefield for atom C12-11727 with 4 bonds
Can not find forcefield for atom C13-11728 with 4 bonds
Can not find forcefield for atom C14-11729 with 4 bonds
Can not find forcefield for atom P1-11744 with 0 bonds
Can not find forcefield for atom O3-11745 with 0 bonds
Can not find forcefield for atom O4-11746 with 0 bonds
Can not find forcefield for atom O21-11754 with 2 bonds
Can not find forcefield for atom C21-11755 with 2 bonds
Can not find forcefield for atom O22-11756 with 0 bonds
Can not find forcefield for atom O31-11763 with 2 bonds
Can not find forcefield for atom C31-11764 with 2 bonds
Can not find forcefield for atom O32-11765 with 0 bonds
Can not find forcefield for atom H4X-11820 with 0 bonds
Can not find forcefield for atom C316-11855 with 5 bonds
Can not find forcefield for atom OH2-11859 with 2 bonds
Can not find forcefield for atom OH2-11862 with 2 bonds
Can not find forcefield for atom OH2-11865 with 2 bonds
Can not find forcefield for atom OH2-11868 with 3 bonds
Can not find forcefield for atom OH2-11871 with 2 bonds
Can not find forcefield for atom OH2-11874 with 2 bonds
Can not find forcefield for atom OH2-11877 with 2 bonds
Can not find forcefield for atom OH2-11880 with 2 bonds
Can not find forcefield for atom OH2-11883 with 2 bonds
Can not find forcefield for atom OH2-11886 with 2 bonds
Can not find forcefield for atom OH2-11889 with 2 bonds
Can not find forcefield for atom OH2-11892 with 2 bonds
Can not find forcefield for atom OH2-11895 with 2 bonds
Can not find forcefield for atom OH2-11898 with 2 bonds
Can not find forcefield for atom OH2-11901 with 2 bonds
Can not find forcefield for atom OH2-11904 with 2 bonds
Can not find forcefield for atom OH2-11907 with 2 bonds
Can not find forcefield for atom OH2-11910 with 2 bonds
Can not find forcefield for atom OH2-11913 with 2 bonds
Can not find forcefield for atom OH2-11916 with 2 bonds
Can not find forcefield for atom OH2-11919 with 2 bonds
Can not find forcefield for atom OH2-11922 with 2 bonds
Can not find forcefield for atom OH2-11925 with 2 bonds
Can not find forcefield for atom OH2-11928 with 2 bonds
Can not find forcefield for atom OH2-11931 with 2 bonds
Can not find forcefield for atom OH2-11934 with 2 bonds
Can not find forcefield for atom OH2-11937 with 2 bonds
Can not find forcefield for atom OH2-11940 with 2 bonds
Can not find forcefield for atom OH2-11943 with 2 bonds
Can not find forcefield for atom OH2-11946 with 2 bonds
Can not find forcefield for atom OH2-11949 with 2 bonds
Can not find forcefield for atom OH2-11952 with 2 bonds
Can not find forcefield for atom OH2-11955 with 2 bonds
Can not find forcefield for atom OH2-11958 with 2 bonds
Can not find forcefield for atom OH2-11961 with 2 bonds
Can not find forcefield for atom OH2-11964 with 2 bonds
Can not find forcefield for atom OH2-11967 with 2 bonds
Can not find forcefield for atom OH2-11970 with 2 bonds
Can not find forcefield for atom OH2-11973 with 2 bonds
Can not find forcefield for atom OH2-11976 with 3 bonds
Can not find forcefield for atom OH2-11979 with 2 bonds
Can not find forcefield for atom OH2-11982 with 2 bonds
Can not find forcefield for atom OH2-11985 with 2 bonds
Can not find forcefield for atom OH2-11988 with 2 bonds
Can not find forcefield for atom OH2-11991 with 2 bonds
Can not find forcefield for atom OH2-11994 with 2 bonds
Can not find forcefield for atom OH2-11997 with 2 bonds
Can not find forcefield for atom OH2-12000 with 2 bonds
Can not find forcefield for atom OH2-12003 with 2 bonds
Can not find forcefield for atom OH2-12006 with 2 bonds
Can not find forcefield for atom OH2-12009 with 2 bonds
Can not find forcefield for atom OH2-12012 with 2 bonds
Can not find forcefield for atom OH2-12015 with 2 bonds
Can not find forcefield for atom OH2-12018 with 2 bonds
Can not find forcefield for atom OH2-12021 with 2 bonds
Can not find forcefield for atom OH2-12024 with 2 bonds
Can not find forcefield for atom OH2-12027 with 2 bonds
Can not find forcefield for atom OH2-12030 with 2 bonds
Can not find forcefield for atom OH2-12033 with 2 bonds
Can not find forcefield for atom OH2-12036 with 2 bonds
Can not find forcefield for atom OH2-12039 with 2 bonds
Can not find forcefield for atom OH2-12042 with 2 bonds
Can not find forcefield for atom OH2-12045 with 2 bonds
Can not find forcefield for atom OH2-12048 with 2 bonds
Can not find forcefield for atom OH2-12051 with 2 bonds
Can not find forcefield for atom OH2-12054 with 2 bonds
Can not find forcefield for atom OH2-12057 with 2 bonds
Can not find forcefield for atom OH2-12060 with 2 bonds
Can not find forcefield for atom OH2-12063 with 2 bonds
Can not find forcefield for atom OH2-12066 with 2 bonds
Can not find forcefield for atom OH2-12069 with 2 bonds
Can not find forcefield for atom OH2-12072 with 2 bonds
Can not find forcefield for atom OH2-12075 with 2 bonds
Can not find forcefield for atom OH2-12078 with 2 bonds
Can not find forcefield for atom H2-12080 with 2 bonds
Can not find forcefield for atom OH2-12081 with 2 bonds
Can not find forcefield for atom H1-12082 with 2 bonds
Can not find forcefield for atom OH2-12084 with 2 bonds
Can not find forcefield for atom OH2-12087 with 2 bonds
Can not find forcefield for atom OH2-12090 with 2 bonds
Can not find forcefield for atom OH2-12093 with 2 bonds
Can not find forcefield for atom OH2-12096 with 2 bonds
Can not find forcefield for atom OH2-12099 with 2 bonds
Can not find forcefield for atom OH2-12102 with 2 bonds
Can not find forcefield for atom OH2-12105 with 2 bonds
Can not find forcefield for atom OH2-12108 with 2 bonds
Can not find forcefield for atom OH2-12111 with 2 bonds
Can not find forcefield for atom OH2-12114 with 2 bonds
Can not find forcefield for atom OH2-12117 with 2 bonds
Can not find forcefield for atom OH2-12120 with 2 bonds
Can not find forcefield for atom OH2-12123 with 2 bonds
Can not find forcefield for atom OH2-12126 with 2 bonds
Can not find forcefield for atom OH2-12129 with 2 bonds
Can not find forcefield for atom OH2-12132 with 2 bonds
Can not find forcefield for atom OH2-12135 with 2 bonds
Can not find forcefield for atom OH2-12138 with 2 bonds
Can not find forcefield for atom OH2-12141 with 2 bonds
Can not find forcefield for atom OH2-12144 with 2 bonds
Can not find forcefield for atom OH2-12147 with 2 bonds
Can not find forcefield for atom OH2-12150 with 2 bonds
Can not find forcefield for atom OH2-12153 with 2 bonds
Can not find forcefield for atom OH2-12156 with 2 bonds
Can not find forcefield for atom OH2-12159 with 2 bonds
Can not find forcefield for atom OH2-12162 with 2 bonds
Can not find forcefield for atom OH2-12165 with 2 bonds
Can not find forcefield for atom OH2-12168 with 2 bonds
Can not find forcefield for atom OH2-12171 with 2 bonds
Can not find forcefield for atom OH2-12174 with 2 bonds
Can not find forcefield for atom OH2-12177 with 2 bonds
Can not find forcefield for atom OH2-12180 with 2 bonds
Can not find forcefield for atom OH2-12183 with 2 bonds
Can not find forcefield for atom OH2-12186 with 2 bonds
Can not find forcefield for atom OH2-12189 with 2 bonds
Can not find forcefield for atom OH2-12192 with 2 bonds
Can not find forcefield for atom OH2-12195 with 2 bonds
Can not find forcefield for atom OH2-12198 with 2 bonds
Can not find forcefield for atom OH2-12201 with 2 bonds
Can not find forcefield for atom OH2-12204 with 2 bonds
Can not find forcefield for atom OH2-12207 with 2 bonds
Can not find forcefield for atom OH2-12210 with 2 bonds
Can not find forcefield for atom OH2-12213 with 2 bonds
Can not find forcefield for atom OH2-12216 with 2 bonds
Can not find forcefield for atom OH2-12219 with 2 bonds
Can not find forcefield for atom OH2-12222 with 2 bonds
Can not find forcefield for atom OH2-12225 with 2 bonds
Can not find forcefield for atom OH2-12228 with 2 bonds
Can not find forcefield for atom OH2-12231 with 2 bonds
Can not find forcefield for atom OH2-12234 with 2 bonds
Can not find forcefield for atom OH2-12237 with 2 bonds
Can not find forcefield for atom OH2-12240 with 2 bonds
Can not find forcefield for atom OH2-12243 with 2 bonds
Can not find forcefield for atom OH2-12246 with 2 bonds
Can not find forcefield for atom OH2-12249 with 2 bonds
Can not find forcefield for atom OH2-12252 with 2 bonds
Can not find forcefield for atom OH2-12255 with 2 bonds
Can not find forcefield for atom OH2-12258 with 2 bonds
Can not find forcefield for atom OH2-12261 with 2 bonds
Can not find forcefield for atom OH2-12264 with 2 bonds
Can not find forcefield for atom OH2-12267 with 3 bonds
Can not find forcefield for atom OH2-12270 with 2 bonds
Can not find forcefield for atom OH2-12273 with 2 bonds
Can not find forcefield for atom OH2-12276 with 2 bonds
Can not find forcefield for atom OH2-12279 with 2 bonds
Can not find forcefield for atom OH2-12282 with 2 bonds
Can not find forcefield for atom OH2-12285 with 2 bonds
Can not find forcefield for atom OH2-12288 with 2 bonds
Can not find forcefield for atom OH2-12291 with 2 bonds
Can not find forcefield for atom OH2-12294 with 2 bonds
Can not find forcefield for atom OH2-12297 with 2 bonds
Can not find forcefield for atom OH2-12300 with 2 bonds
Can not find forcefield for atom OH2-12303 with 2 bonds
Can not find forcefield for atom OH2-12306 with 2 bonds
Can not find forcefield for atom OH2-12309 with 2 bonds
Can not find forcefield for atom OH2-12312 with 2 bonds
Can not find forcefield for atom OH2-12315 with 2 bonds
Can not find forcefield for atom OH2-12318 with 2 bonds
Can not find forcefield for atom OH2-12321 with 2 bonds
Can not find forcefield for atom OH2-12324 with 2 bonds
Can not find forcefield for atom OH2-12327 with 2 bonds
Can not find forcefield for atom OH2-12330 with 2 bonds
Can not find forcefield for atom OH2-12333 with 2 bonds
Can not find forcefield for atom OH2-12336 with 2 bonds
Can not find forcefield for atom OH2-12339 with 2 bonds
Can not find forcefield for atom OH2-12342 with 2 bonds
Can not find forcefield for atom OH2-12345 with 2 bonds
Can not find forcefield for atom OH2-12348 with 2 bonds
Can not find forcefield for atom OH2-12351 with 2 bonds
Can not find forcefield for atom OH2-12354 with 2 bonds
Can not find forcefield for atom OH2-12357 with 2 bonds
Can not find forcefield for atom C11-12361 with 5 bonds
Can not find forcefield for atom C12-12362 with 4 bonds
Can not find forcefield for atom C13-12363 with 5 bonds
Can not find forcefield for atom C14-12364 with 4 bonds
Can not find forcefield for atom H23-12369 with 2 bonds
Can not find forcefield for atom H41-12373 with 2 bonds
Can not find forcefield for atom H43-12375 with 2 bonds
Can not find forcefield for atom C15-12376 with 5 bonds
Can not find forcefield for atom P1-12379 with 0 bonds
Can not find forcefield for atom O3-12380 with 0 bonds
Can not find forcefield for atom O4-12381 with 0 bonds
Can not find forcefield for atom O21-12389 with 2 bonds
Can not find forcefield for atom C21-12390 with 3 bonds
Can not find forcefield for atom O22-12391 with 0 bonds
Can not find forcefield for atom O31-12398 with 2 bonds
Can not find forcefield for atom C31-12399 with 2 bonds
Can not find forcefield for atom O32-12400 with 0 bonds
Can not find forcefield for atom C11-12495 with 4 bonds
Can not find forcefield for atom C12-12496 with 4 bonds
Can not find forcefield for atom C13-12497 with 4 bonds
Can not find forcefield for atom C14-12498 with 4 bonds
Can not find forcefield for atom P1-12513 with 0 bonds
Can not find forcefield for atom O3-12514 with 0 bonds
Can not find forcefield for atom O4-12515 with 0 bonds
Can not find forcefield for atom O21-12523 with 2 bonds
Can not find forcefield for atom C21-12524 with 2 bonds
Can not find forcefield for atom O22-12525 with 0 bonds
Can not find forcefield for atom C31-12533 with 1 bonds
Can not find forcefield for atom O32-12534 with 0 bonds
Can not find forcefield for atom C29-12556 with 3 bonds
Can not find forcefield for atom C210-12558 with 2 bonds
Can not find forcefield for atom H11Y-12611 with 0 bonds
Can not find forcefield for atom C11-12629 with 6 bonds
Can not find forcefield for atom C12-12630 with 4 bonds
Can not find forcefield for atom C13-12631 with 4 bonds
Can not find forcefield for atom C14-12632 with 4 bonds
Can not find forcefield for atom H42-12642 with 2 bonds
Can not find forcefield for atom C15-12644 with 5 bonds
Can not find forcefield for atom P1-12647 with 1 bonds
Can not find forcefield for atom O3-12648 with 0 bonds
Can not find forcefield for atom O4-12649 with 0 bonds
Can not find forcefield for atom O1-12650 with 2 bonds
Can not find forcefield for atom O21-12657 with 2 bonds
Can not find forcefield for atom C21-12658 with 2 bonds
Can not find forcefield for atom O22-12659 with 0 bonds
Can not find forcefield for atom O31-12666 with 2 bonds
Can not find forcefield for atom C31-12667 with 2 bonds
Can not find forcefield for atom O32-12668 with 0 bonds
Can not find forcefield for atom C29-12690 with 2 bonds
Can not find forcefield for atom C210-12692 with 2 bonds
Can not find forcefield for atom H16R-12710 with 0 bonds
Can not find forcefield for atom OH2-12762 with 2 bonds
Can not find forcefield for atom OH2-12765 with 2 bonds
Can not find forcefield for atom OH2-12768 with 2 bonds
Can not find forcefield for atom OH2-12771 with 2 bonds
Can not find forcefield for atom OH2-12774 with 2 bonds
Can not find forcefield for atom OH2-12777 with 2 bonds
Can not find forcefield for atom OH2-12780 with 2 bonds
Can not find forcefield for atom OH2-12783 with 2 bonds
Can not find forcefield for atom OH2-12786 with 2 bonds
Can not find forcefield for atom OH2-12789 with 2 bonds
Can not find forcefield for atom OH2-12792 with 2 bonds
Can not find forcefield for atom OH2-12795 with 2 bonds
Can not find forcefield for atom OH2-12798 with 2 bonds
Can not find forcefield for atom OH2-12801 with 2 bonds
Can not find forcefield for atom OH2-12804 with 2 bonds
Can not find forcefield for atom OH2-12807 with 2 bonds
Can not find forcefield for atom OH2-12810 with 2 bonds
Can not find forcefield for atom OH2-12813 with 2 bonds
Can not find forcefield for atom OH2-12816 with 2 bonds
Can not find forcefield for atom OH2-12819 with 2 bonds
Can not find forcefield for atom OH2-12822 with 2 bonds
Can not find forcefield for atom OH2-12825 with 2 bonds
Can not find forcefield for atom OH2-12828 with 2 bonds
Can not find forcefield for atom OH2-12831 with 2 bonds
Can not find forcefield for atom OH2-12834 with 2 bonds
Can not find forcefield for atom OH2-12837 with 2 bonds
Can not find forcefield for atom OH2-12840 with 2 bonds
Program x2top, VERSION 3.3.3
Source code file: x2top.c, line: 206
Fatal error:
Could only find a forcefield type for 10110 out of 12941 atoms
what should be the problem.
and how can i solve it.
Ashish Pandey
NIPER India
--
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
sp...@xray.bmc.uu.se sp...@gromacs.org http://folding.bmc.uu.se
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