On 1/6/10 6:57 AM, rasoul nasiri wrote:
Then your executable has problem. Gromacs tool can not find DSSP for
doing d_dssp. Do you put executable DSSP in the path of gromacs is
installed?
This is not necessary. One needs to set the environment variable DSSP
correctly, since the default location that do_dssp expects is
/usr/local/bin/dssp, not anything to do with the location of Gromacs.
-Justin
Rasoul.
On Wed, Jan 6, 2010 at 11:58 AM, leila karami <karami.lei...@gmail.com
<mailto:karami.lei...@gmail.com>> wrote:
dear Rasoul
I had executable dssp program, already.
leila karami
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========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
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