Hi I want to obtain dynamic cross correlation map (DCCM). I used following command for obtaining covariance matrix.
g_covar -f traj.xtc -s topol.tpr -o eigenval.xvg -v eigenvec.trr -l covar.log -xpm covar.xpm. my system consists protein of 70 aminoacids. I want survey correlated and anti-correlated motion between residues. Is my manner true? If so, which of output files in above give me dynamic cross correlation map (DCCM)? otherwise, please guide me.
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