afsaneh maleki wrote:
Hi,
how do i obtain the most probable secondary structure for each residue
to analyze the detailed conformation of the peptide?
i used do_dssp then converted *.eps to *.ps then obtained secondary
structure.
You could write a script to parse through the output .xpm file, matching the
incidence of the various secondary structure components per residue. To get a
more global perspective, simply collect statistics (i.e., g_analyze) from
scount.xvg, but you won't be able to get a per-residue analysis this way.
-Justin
highly appreciate!!
Afsaneh Maleki
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
