Thanks, I found the problem, I was using a wrong index file :P My bad,
On Wed, Apr 7, 2010 at 8:32 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote: > On 8/04/2010 10:22 AM, Camilo Andrés Jimenez Cruz wrote: > >> Hi all >> >> I am using gromacs-3.3.99's g_sas_s in a long trajectory and I get this >> error right away. I assume its memory capacity, is there a way (other >> than cutting the trj in smaller chunks?) >> > > Use a bigger computer? See g_sas -h for some built-in options to do a > smaller part of the calculation. > > Mark > > > Select a group: Select a group: *** glibc detected *** >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s: malloc(): memory >> corruption: >> 0x000000000a809680 *** >> ======= Backtrace: ========= >> /lib64/libc.so.6[0x38b8c71d21] >> /lib64/libc.so.6(__libc_calloc+0xc3)[0x38b8c72bb3] >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x4257d5] >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x40419a] >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x405b1a] >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x402de3] >> /lib64/libc.so.6(__libc_start_main+0xf4)[0x38b8c1d8b4] >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x402d19] >> ======= Memory map: ======== >> 00400000-00599000 r-xp 00000000 08:05 813706 >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s >> 00799000-007a2000 rwxp 00199000 08:05 813706 >> /usr/local/gromacs-3.3.99_20071008/bin/g_sas_s >> 007a2000-007ad000 rwxp 007a2000 00:00 0 >> 0a7dd000-0a840000 rwxp 0a7dd000 00:00 0 >> >> thanks in advance >> >> -- >> Camilo Andrés Jiménez Cruz >> >> -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Camilo Andrés Jiménez Cruz
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
