I've added a few flags and fixed some of the error messages but now I am getting these messages. Does anyone have any ideas about what I am doing wrong?
creating highway Making all in contrib make[3]: Nothing to be done for `all'. make[3]: Nothing to be done for `all-am'. Making all in admin make[1]: Nothing to be done for `all'. Making all in scripts cat ./GMXRC.in | sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' > GMXRC cat ./GMXRC.csh.in | sed 's,@libdir\@,/Users/emily/gromacstrial/lib,' | \ sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \ sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \ sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.csh cat ./GMXRC.bash.in | sed 's,@libdir\@,/Users/emily/gromacstrial/lib,' | \ sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \ sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \ sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.bash cat ./GMXRC.zsh.in | sed 's,@libdir\@,/Users/emily/gromacstrial/lib,' | \ sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \ sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \ sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.zsh Making all in share Making all in top make[2]: Nothing to be done for `all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for `all'. Making all in nmr2 make[3]: Nothing to be done for `all'. Making all in speptide make[3]: Nothing to be done for `all'. Making all in water make[3]: Nothing to be done for `all'. Making all in gmxdemo make[3]: Nothing to be done for `all'. Making all in methanol make[3]: Nothing to be done for `all'. Making all in mixed make[3]: Nothing to be done for `all'. make[3]: Nothing to be done for `all-am'. Making all in template cat ./Template.mak | \ sed 's,@LDFLAGS\@,-L/Users/emily/gromacstrial/lib -L/Developer/opt/intel/Compiler/11.1/067/Frameworks/mkl/lib/em64t -framework Accelerate,' | \ sed 's,@LIBS\@,-lmd -lgmx -lxml2 -L/usr/X11/lib -R/usr/X11/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lm -lSM -lICE -lX11 ,' | \ sed 's,@CFLAGS\@,-O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -I/usr/include/libxml2 -I/Users/emily/gromacstrial/include -I/Users/emily/gromacstrial/include/gromacs,' | \ sed 's,@CC\@,cc,' | \ sed 's,@host\@,x86_64-apple-darwin,' >Makefile.x86_64-apple-darwin Making all in html Making all in . make[3]: Nothing to be done for `all-am'. Making all in images make[3]: Nothing to be done for `all'. Making all in online make[3]: Nothing to be done for `all'. make[2]: Nothing to be done for `all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for `all'. make[2]: Nothing to be done for `all-am'. make[1]: Nothing to be done for `all-am'. nom27267d:gromacs-4.0.7-mbh emily$ On Wed, May 12, 2010 at 10:10 AM, Emily Curtis <emilymariecur...@gmail.com>wrote: > Here are all of the messages I get when I type "make". I have been trying > to figure this out based on mailing list emails but I cant seem to find what > I need to fix. Thank you for your help. > > Emily-Curtis-MacBook-Pro:gromacs-4.0.7-mbh emily$ make > Making all in include > Making all in . > make[2]: Nothing to be done for `all-am'. > Making all in types > make[2]: Nothing to be done for `all'. > Making all in src > make all-recursive > Making all in gmxlib > Making all in nonbonded > Making all in nb_kernel_ia32_sse > /bin/sh ../../../../libtool --mode=compile cc -O3 -fomit-frame-pointer > -finline-functions -Wall -Wno-unused -funroll-all-loops -c -o > nb_kernel010_ia32_sse.lo nb_kernel010_ia32_sse.s > cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused > -funroll-all-loops -c nb_kernel010_ia32_sse.s -o nb_kernel010_ia32_sse.o > nb_kernel010_ia32_sse.s:88:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:90:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:91:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:92:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:93:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:94:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:95:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:796:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:797:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:798:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:799:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:800:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:801:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:866:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:868:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:869:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:870:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:871:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:872:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:873:suffix or operands invalid for `push' > nb_kernel010_ia32_sse.s:1345:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:1346:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:1347:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:1348:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:1349:suffix or operands invalid for `pop' > nb_kernel010_ia32_sse.s:1350:suffix or operands invalid for `pop' > make[5]: *** [nb_kernel010_ia32_sse.lo] Error 1 > make[4]: *** [all-recursive] Error 1 > make[3]: *** [all-recursive] Error 1 > make[2]: *** [all-recursive] Error 1 > make[1]: *** [all] Error 2 > make: *** [all-recursive] Error 1 > > > On Wed, May 12, 2010 at 3:46 AM, Erik Marklund <er...@xray.bmc.uu.se>wrote: > >> Hi, >> >> These error messages are not very informative, they just state that >> something went wrong in the linking process. There ought to be more >> descriptive messages prior to these linker errors. Post those, then perhaps >> we can help you out. >> >> Erik >> >> Emily Curtis skrev: >> >> Dr. Bonner, >>> >>> I am trying to install gromacs on a mac. I am running Leopard. I can >>> configure successfully, however, when I type "make" I am getting the same >>> errors that you reported: >>> >>> make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1 >>> make[4]: *** [all-recursive] Error 1 >>> make[3]: *** [all-recursive] Error 1 >>> make[2]: *** [all-recursive] Error 1 >>> make[1]: *** [all] Error 2 >>> make: *** [all-recursive] Error 1 >>> >>> I read the gcc manual but I can't figure out what flags I need to >>> include. Did you ever figure out the flags you needed to include to fix >>> this? I appreciate your help >>> >>> Emily >>> >> >> >> -- >> ----------------------------------------------- >> Erik Marklund, PhD student >> Dept. of Cell and Molecular Biology, Uppsala University. >> Husargatan 3, Box 596, 75124 Uppsala, Sweden >> phone: +46 18 471 4537 fax: +46 18 511 755 >> er...@xray.bmc.uu.se http://folding.bmc.uu.se/ >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > >
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