----- Original Message ----- From: pawan raghav <pwnr...@gmail.com> Date: Tuesday, May 18, 2010 17:34 Subject: [gmx-users] RMSIP (Root mean square inner products)? To: gmx-users@gromacs.org
> Please tell me how gromacs calculates degree of overlap between > conformational spaces of the two proteins is it from RMSIP (Root mean square > inner products)? if yes then give me the reference in gromacs tutorial 4.0> GROMACS probably doesn't have a shrink-wrapped tool to calculate this. You can probably get the job done with some combination of tools, however. IIRC someone asked about this previously on the list, so please search. Mark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
