but it over writes on the previous status. On Wed, May 19, 2010 at 2:12 PM, Thomas Schlesier <schl...@uni-mainz.de>wrote:
> Use genion multiple times. > If you want to insert Na+ and K+, then first use genion with one and then > with the other ion. > > Greetings > Thomas > > > > Message: 5 > Date: Wed, 19 May 2010 11:37:09 +0430 > > From: tahereh tekieh <golesan...@gmail.com> > Subject: Re: [gmx-users] water medium > To: jalem...@vt.edu, Discussion list for GROMACS users > <gmx-users@gromacs.org> > Message-ID: > <aanlktikvksqelk-hu04toj6a_fg2iqwrlcx0xj_jn...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > > but genion only accepts one type of ion, how can we insert different types? > > On Tue, May 18, 2010 at 3:38 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > > > > > > > > tahereh tekieh wrote: > > > > >> >> dear friends > >> >> i want to simulate a water medium in which 5 types of different ions > flow > >> >> in it. how can i do that with gromacs? > >> >> thanks > >> >> > >> >> > > > Assuming they are monoatomic, you can use genion after you have added > > > water. If they are polyatomic, use genbox -ci -nmol (before filling > the box > > > with water). > > > > > > -Justin > > > > > > -- > > > ======================================== > > > > > > Justin A. Lemkul > > > Ph.D. Candidate > > > ICTAS Doctoral Scholar > > > MILES-IGERT Trainee > > > Department of Biochemistry > > > Virginia Tech > > > Blacksburg, VA > > > jalemkul[at]vt.edu | (540) 231-9080 > > > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > > > > > ======================================== > > > -- > > > gmx-users mailing list gmx-users@gromacs.org > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > Please search the archive at http://www.gromacs.org/search before > posting! > > > Please don't post (un)subscribe requests to the list. Use the www > interface > > > or send it to gmx-users-requ...@gromacs.org. > > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20100519/39452e95/attachment-0001.html > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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