Dear All I’m trying to obtain RMSD distribution of a ligand in the binding site of the receptor protein during 40 ns MD simulation. Could you please explain:
- what is exactly the yaxis unit of the plot obtained using g_cluster with –dist option - how is this distribution calculated? Thank you in advance, All best, Michal -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
