Hi again,Sorry, in "REMARK 470" there is:REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE
MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN
IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 2 OG
REMARK 470 GLN A 678 CA C
O CB CG CD OE1 NE2 REMARK 470 SER B 2 OG
REMARK 470 GLY B 679 CA C
O This means there are missing atoms.
Is it possible to add these atoms from other residue what are SER and GLN and
GLY?( Copy and Paste OG from other
SER for example?) I think after EM these are fixed, it is true?
Thank you
> Hi everyone,
> I have one question about adding atoms that are missing in residue. This atom
> is OG in SER amino acid. I don't know how can I add this atom to my residue.
> If I have to add this atom manually how can I find coordinates of that? Or If
> there is server or software to do this I will be happy if you suggest me
> its.>
There's no automated GROMACS tool, and I haven't used any other particular tool
for the task. For just one atom + hydrogen, you're probably fine to guess
approximate coordinates and use EM to fix it.
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