Thanks Mark for your advice Note: The fit analysis group are identical, while the fit is mass weighted and the analysis is not making the fit non mass weighted.
But, this is the the real unning out put of the command prompt Please let me know anyone what is the meaning of this note? and also tell me is it right to choose C-alpha group for two times? > Yes I want to do the structure-fitting on the same set of atoms as I do the analysis. -- Pawan
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