----- Original Message -----
From: Nasim Biglari <[email protected]>
Date: Friday, June 11, 2010 2:51
Subject: [gmx-users] GROMACS on CYGWIN
To: [email protected]


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> Dear all,
> 
> I was wondering whether GROMACS on CYGWIN is less capable than GROMACS run on 
> LINUX?
>  i.e. concerning its speed and its ability to simulate larger macromolecules. 
> I assume that it is faster, but is it very much different?

GROMACS will run fine, and do approximately the same under either OS on 
comparable hardware with the same version of gcc, however for production 
simulation to be maximally effective you need to arrange for the simulation 
process not to be interrupted much. This is easier to arrange on Linux than 
Windows. You certainly don't want to be concurrently using either kind of 
machine as a desktop, and also you'd prefer not to be logged on to either 
machine.

Mark
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