Hi all I used [ g_rama -f *.xtc -s *.tpr -o rama.xvg ] command for analysis of protein. gromacs give me rama.xvg as output but during calculation :
Found 68 phi-psi combinations Dihedral around 9,11 not found in topology. Using mult=3 Dihedral around 11,18 not found in topology. Using mult=3 Dihedral around 20,22 not found in topology. Using mult=3 Dihedral around 22,29 not found in topology. Using mult=3 Dihedral around 33,36 not found in topology. Using mult=3 Dihedral around 40,47 not found in topology. Using mult=3 Dihedral around 51,58 not found in topology. Using mult=3 Dihedral around 62,65 not found in topology. Using mult=3 Dihedral around 301,303 not found in topology. Using mult=3 Dihedral around 303,314 not found in topology. Using mult=3 Dihedral around 318,336 not found in topology. Using mult=3 Dihedral around 340,358 not found in topology. Using mult=3 Dihedral around 360,362 not found in topology. Using mult=3 Dihedral around 362,378 not found in topology. Using mult=3 Dihedral around 382,393 not found in topology. Using mult=3 Dihedral around 397,407 not found in topology. Using mult=3 Dihedral around 411,424 not found in topology. Using mult=3 Dihedral around 428,446 not found in topology. Using mult=3 Dihedral around 450,467 not found in topology. Using mult=3 Dihedral around 471,486 not found in topology. Using mult=3 Dihedral around 490,497 not found in topology. Using mult=3 Dihedral around 509,511 not found in topology. Using mult=3 Dihedral around 523,525 not found in topology. Using mult=3 Dihedral around 529,540 not found in topology. Using mult=3 Dihedral around 544,564 not found in topology. Using mult=3 Dihedral around 568,586 not found in topology. Using mult=3 Dihedral around 590,610 not found in topology. Using mult=3 Dihedral around 614,629 not found in topology. Using mult=3 Dihedral around 633,639 not found in topology. Using mult=3 Dihedral around 643,661 not found in topology. Using mult=3 Dihedral around 665,678 not found in topology. Using mult=3 Dihedral around 682,697 not found in topology. Using mult=3 Dihedral around 701,714 not found in topology. Using mult=3 Dihedral around 718,733 not found in topology. Using mult=3 Dihedral around 737,744 not found in topology. Using mult=3 Dihedral around 748,759 not found in topology. Using mult=3 Dihedral around 763,783 not found in topology. Using mult=3 Dihedral around 787,800 not found in topology. Using mult=3 Dihedral around 804,816 not found in topology. Using mult=3 Dihedral around 820,838 not found in topology. Using mult=3 Dihedral around 842,852 not found in topology. Using mult=3 Dihedral around 856,876 not found in topology. Using mult=3 Dihedral around 880,896 not found in topology. Using mult=3 Dihedral around 900,913 not found in topology. Using mult=3 Dihedral around 917,927 not found in topology. Using mult=3 Dihedral around 931,951 not found in topology. Using mult=3 Dihedral around 955,975 not found in topology. Using mult=3 Dihedral around 979,985 not found in topology. Using mult=3 Dihedral around 989,1007 not found in topology. Using mult=3 Dihedral around 1011,1031 not found in topology. Using mult=3 Dihedral around 1035,1055 not found in topology. Using mult=3 Dihedral around 1059,1079 not found in topology. Using mult=3 Dihedral around 1083,1090 not found in topology. Using mult=3 Dihedral around 1094,1097 not found in topology. Using mult=3 Dihedral around 1109,1111 not found in topology. Using mult=3 Dihedral around 1115,1122 not found in topology. Using mult=3 Dihedral around 1126,1133 not found in topology. Using mult=3 is this rama.xvg file true and intact?
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