On 7/14/10 9:44 PM, munu...@yahoo.com wrote:
Hi
How do I built the terminals of a peptide withe ACE and NHMe i.e.CH3CO and
NHCH3 respectively. please suggest. My sequence is -Q-Q-Q-Q-Q-Q-Q-Q-Q-Q-
M. Baskar.
just add an extra residue (e.g. gly or ala) at eeither end using pymol
or so, and then rename them in a text editor and throw away superfluous
atoms.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Professor of Biology
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
sp...@xray.bmc.uu.se sp...@gromacs.org http://folding.bmc.uu.se
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