You can just delete them in the generated top file. dawei
On Fri, Jul 16, 2010 at 10:45 AM, C. Batistakis <cbat...@yahoo.gr> wrote: > Dear all > > According to the manual, pdb2gmx generates all the angles, pairs and > dihedrals automatically in a polymer chain. Because I need nothing of them > do you know any fast way to avoid this generation? > > The only think I found in the manual is to add [ exclusions ] in the .rtp > file for whatever I don't want to be generated, but I am wondering if there > is any better way. > > Thanks in advance > Chrysostomos > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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