Hello, I am trying to freeze a bond (3.5 A) in my system. I used the index file to define group and I added this two lines in my .mdp file.
freezegrps = PA NE freezedim = Y Y Y Y Y Y I used g_dist to verify the distance between the freezing atoms and it turned out 3.9 A. I checked my .itp also (distance is 3.5). How can I freeze a bond? Nilesh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
