Dear gmx-users I want to simulate a protein which biological function defined by dimer formation. I need to simulate this protein in dimer as well as in monomeric form to solve my objectives. I am using Gromacs-4.0.4 for simulation. I have a doubt, is there any specific parameters for dimer simulation or we have to use similar parameters like monomer protein simulation. I read some literature's on dimer simulation but they are using similar parameters like monomer. -- Regards Sanjay Kumar Upadhyay Research Scholor Protein Dynamics lab Dept of Chemistry IIT Powai, Mumbai, 400076 Ph no. 09920200345, 09699353562,
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