Hi Alan, I assume this is still the same issue on the same issue (same machine/os) as you reported last time.
Could you provide some details about the version of OS, compiler, CUDA, OpenMM you're using? I'll look into the problem and get back to you if I figure out something. Cheers, -- Szilárd On Sat, Sep 11, 2010 at 12:56 AM, Alan <alanwil...@gmail.com> wrote: > I am doing, after compiling and installing the normal grmx 4.5: > rm -fr CMakeCache.txt > make clean > export OPENMM_ROOT_DIR=/usr/local/openmm > cmake -DGMX_OPENMM=ON .. > make mdrun > [ 1%] Building NVCC (Device) object > src/kernel/gmx_gpu_utils/./gmx_gpu_utils_generated_memtestG80_core.cu.o > [ 1%] Building NVCC (Device) object > src/kernel/gmx_gpu_utils/./gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > Scanning dependencies of target gmx_gpu_utils > Linking CXX shared library libgmx_gpu_utils.dylib > Undefined symbols: > "_gmx_strncasecmp", referenced from: > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > "_debug", referenced from: > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > do_timed_memtest(int, int)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > do_full_memtest(int) in gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > do_quick_memtest(int) in gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > "_trim", referenced from: > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > is_supported_cuda_gpu(int, char*)in > gmx_gpu_utils_generated_gmx_gpu_utils.cu.o > ld: symbol(s) not found > collect2: ld returned 1 exit status > make[3]: *** [src/kernel/gmx_gpu_utils/libgmx_gpu_utils.dylib] Error 1 > make[2]: *** [src/kernel/gmx_gpu_utils/CMakeFiles/gmx_gpu_utils.dir/all] > Error 2 > make[1]: *** [src/kernel/CMakeFiles/mdrun.dir/rule] Error 2 > make: *** [mdrun] Error 2 > > > -- > Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. >>>http://www.bio.cam.ac.uk/~awd28<< > > -- > gmx-users mailing list gmx-us...@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists