I am trying to check some of these issues. thanks for your help Date: Sat, 20 Nov 2010 03:38:08 +1100 From: mark.abra...@anu.edu.au To: gmx-users@gromacs.org Subject: Re: [gmx-users] mpdboot and mpirun hangs (not crashing)
Message body On 20/11/2010 2:57 AM, X Rules wrote: Hi, I am trying to run my production run with mpirun and this hangs (basically stop writing any files). The processes continue to run without any output. I have to kill and restart which again hangs after some time. Does anyone have any problems with this? what I am doing is mpdboot -n 1 -f NODEFILE nohup mpirun -np 12 mdrun_mpi -v -deffnm protein-prod & what could have been going wrong here?? What could I try Probably something about your MPI installation, or perhaps network file system, is poorly configured, but it's impossible for us to guess better with the information we have. You should try different things and see what works and what does not. Mark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists