Hi Ahmet, I'm not sure whether it's been checked. It has been found that NMR structures tend to yield larger deviations than crystal structures. If you're going to try, due make sure to compensate for other potential influences, such as the size and sphericity of the proteins.
Cheers, Tsjerk 2010/11/25 ahmet yıldırım <ahmedo...@gmail.com>: > Hi, > > Is there a relationship between RMSD value obtained from the calculation and > Resolution value in PDB file? > > Thanks in advance > > -- > Ahmet YILDIRIM > > -- > gmx-users mailing list gmx-us...@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
