lloyd riggs wrote:
Dear All, (this is a repost as I included no subjectline)
I have the following error, for both mpi and normal mdrun modes. I tried both
using a pull group for the first time, but when the error persisted, went back
and used data/md.mdp files which I know work as a test and get the same errors.
[anode27:16555] *** Process received signal ***
[anode27:16555] Signal: Segmentation fault (11)
[anode27:16555] Signal code: Address not mapped (1)
[anode27:16555] Failing at address: 0x2b56a416a530
[anode27:16555] [ 0] /lib/libpthread.so.0(+0xf010) [0x2b5687981010]
[anode27:16555] [ 1]
/home/ubelix/l_insel_ria/l_watkins/lib/libgmx_mpi_d.so.6(+0x20303c)
[0x2b56867d603c]
[anode27:16555] *** End of error message ***
and then a complete core dump.
If I run an em , it runs, but does not do anything (start=finish).
I had installed the newest version 4.5.3 a few weeks back, and just realized
something has gone wrong, as I used em's to test quickly, but only looked to
see if it gave the output files (I mean they were the correct sizes as it runs
50-100 iterations with nothing in any field, such as pressure, energy,
etc...and then says converged).
Does anyone know how to fix this?
If you suspect a faulty installation, then you need to post more information,
like:
- compilers used
- cmake or autoconf?
- hardware
- commands used to install
-Justin
Sincerely
Stephan Watkins
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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