Dear Justin, Thanks for sharing your knowledge with me. I have gone through the tutorial and observed -extrn extract projected structure along with first two eigen vectors. Each Eigen Vector represents minimum and maximum strucuture value.
I am a bit confiused about the values for minimum and maximum. I dont know the exact meaning of score for minmum and maximum values. Are these values deviation (Displacement) and what is its unit and which score is the best score along any eigen vector? Please help me out with this problem. Is it possible to extract minimum energy sructructue from a MD trajectory by using G_anaeig. Give me some clue about these minimum/maximum scores.Can i consider thhis mimimum or maximum structure as a native structure? Pawan Raghav
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