On 16/01/2011 9:27 PM, Mr Bernard Ramos wrote:
Dear all,

I need help. I am trying to install Gromacs using Cygwin. However, I do not seem to have access to it. I am very new with Cygwin. I just followed the steps provided by the following sites:

http://machine-phase.blogspot.com/2009/04/how-to-install-gromacs-on-windows-vista.html and http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO

but in the end when I type "luck" it returns "command not found".

These are the steps I did.

1. Downloaded fftw-3.2.2 and gromacs-4.5.3 and saved them in C:\Packages

2. After installing cygwin, I changed directory by typing in the following in order to work with fftw-3.2.2

cd /cygdrive/c/Packages/fftw-3.2.2

and then I typed in

./configure --enable-threads --enable-sse w--enable-float


Hopefully that extra 'w' is spurious. Actually copying and pasting is a good practice.


followed by

make

then

make install

2. I then worked for the gromacs-4.5.3 by typing in

cd /cygdrive/c/Packages/gromacs-4.5.3

and then

./configure --enable-shared LDFLAGS="-L/usr/local/lib"

make

make install

make links

make clean



3. I typed "luck" after all the procedures above but what I get is "command not found". I am still at /cygdrivec/Packages/gromacs-4.5.3.

Is this the correct path to run the gromacs?


See the official installation instructions regarding getting access to GROMACS after installation.

Mark
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