On Thu, Jan 20, 2011 at 7:44 PM, Justin A. Lemkul <jalem...@vt.edu> wrote:
> > > bharat gupta wrote: > >> I loaded the .gro file generated after pdb2gmx command in vmd and then I >> loaded the .trr file into that molecule but it shows frame 1 vol 0 in VMD >> and when I click the play button on the toolbar the frames doesn't move ... >> can anybody tell me how to play the simula tion in VMD ?? or where am i >> going wrong >> >> >> > How many frames did you save in the .trr file? Use gmxcheck. If it has > multiple frames, it will load them all and you can watch the movie. Sounds > like you haven't saved enough frames. > > -Justin > > -- >> Bharat >> Ph.D. Candidate >> Room No. : 7202A, 2nd Floor >> Biomolecular Engineering Laboratory >> Division of Chemical Engineering and Polymer Science >> Pusan National University >> Busan -609735 >> South Korea >> Lab phone no. - +82-51-510-3680, +82-51-583-8343 >> Mobile no. - 010-5818-3680 >> E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com> >> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > After running the simulation I checked the trajectory in using ngmx in some other system .. and it was working .. since I need to do some more analysis during trajectory run on my protein I thought of running into VMD and I used the file .trr after completng the simulation . -- Bharat Ph.D. Candidate Room No. : 7202A, 2nd Floor Biomolecular Engineering Laboratory Division of Chemical Engineering and Polymer Science Pusan National University Busan -609735 South Korea Lab phone no. - +82-51-510-3680, +82-51-583-8343 Mobile no. - 010-5818-3680 E-mail : monu46...@yahoo.com
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