Dear all I am trying to run simulation of transmembrane protein, i am looking for better ways to setup protein with lipid membrane. initially i used VMD to insert protein with lipid membrane but it did not come out well, i got errors while running position restraint. i read about g_membed tool in gromacs, is it helpful for setting up transmembrane proteins also? Is there any other better ways to insert protein perfectly into the membrane? Please help me to overcome this problem.....
Thanks and regards -- Mohanalakshmi N
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