simon sham wrote:
Hi,
1. I have a protein which is missing both the first and last amino acids
in the sequence. Do you know any free linux softwares that can insert
these missing amino acids?
A number of possibilities are listed here:
http://www.gromacs.org/Documentation/File_Formats/Coordinate_File#Sources
2. Since only two amino acids are missing, one in both end, can I simply
ignore them in simulations?
If they're not functionally relevant or important to your aims, then probably.
But no one on this list can answer that for you.
-Justin
Thanks for your insight in advance.
Best,
Simon
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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