yup, i typed g_luck and it worked. the error that shows is ---------------------------------------------------------- File input/output error: filename.pdb For more information, visit ............ ----------------------------------------------------------
--- On Mon, 1/31/11, Justin A. Lemkul <jalem...@vt.edu> wrote: From: Justin A. Lemkul <jalem...@vt.edu> Subject: Re: [gmx-users] luck To: "Discussion list for GROMACS users" <gmx-users@gromacs.org> Date: Monday, January 31, 2011, 12:11 PM Mr Bernard Ramos wrote: > Hi everyone! > I have two questions. > 1. after I installed gromacs 4.5.3 and "which mdrun" was able to give the >correct path, I was not able to run "luck". Instead, "luck" gives an error >"command not found". Is this ok? What went wrong? Do I need to install again >gromacs? > The program is now called g_luck. > 2. I tried doing "pdb2gmx". The error points the structure file "*.pdb" as > the error. Does this in dicate that the program was not installed properly or > there is an error with the pdb file. > If the program has given you a fatal error, then the program is correctly installed and working. It is your input that is somehow wrong. Without the actual error message, it's impossible to say what's wrong. -Justin > Thanks > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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