Hi Vigneshwar, the problem is fixed now in the release-4-0-patches branch.
Carsten On Feb 1, 2011, at 2:00 PM, Carsten Kutzner wrote: > Hi, > > apparently this bug fix made it to 4.5, but not to 4.0. > I will apply the fix also there. > > Carsten > > On Feb 1, 2011, at 1:58 PM, Justin A. Lemkul wrote: > >> >> >> Vigneshwar Ramakrishnan wrote: >>> Dear All, >>> I am using the gromacs 4.0.7 version and I was trying to calculate the >>> momentum autocorrelation function by using the -m flag. However, I get a >>> segmentation fault as follows: >>> trn version: GMX_trn_file (double precision) >>> Reading frame 0 time 0.000 Segmentation fault >>> When I don't use the -m option, I have no problem. >>> Upon searching the userslist, I found this thread: >>> http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html and a >>> patch, but I don't find any related bugs reported elsewhere. So, I am just >>> wondering if I sould go ahead and use the patch or if there could be >>> something else that is wrong. Will appreciate any kind of pointers. >> >> Either apply the patch or upgrade to a newer version of Gromacs that >> contains this bug fix. >> >> -Justin >> >>> Sincerely, Vignesh >>> -- >>> R.Vigneshwar >>> Graduate Student, >>> Dept. of Chemical & Biomolecular Engg, >>> National University of Singapore, >>> Singapore >>> "Strive for Excellence, Never be satisfied with the second Best!!" >>> I arise in the morning torn between a desire to improve the world and a >>> desire to enjoy the world. This makes it hard to plan the day. (E.B. White) >> >> -- >> ======================================== >> >> Justin A. Lemkul >> Ph.D. Candidate >> ICTAS Doctoral Scholar >> MILES-IGERT Trainee >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www interface >> or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > Dr. Carsten Kutzner > Max Planck Institute for Biophysical Chemistry > Theoretical and Computational Biophysics > Am Fassberg 11, 37077 Goettingen, Germany > Tel. +49-551-2012313, Fax: +49-551-2012302 > http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Dr. Carsten Kutzner Max Planck Institute for Biophysical Chemistry Theoretical and Computational Biophysics Am Fassberg 11, 37077 Goettingen, Germany Tel. +49-551-2012313, Fax: +49-551-2012302 http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists