bharat gupta wrote:
Hi,
I want to calculate the RMSF of residues and not of protein ... how can
this be done with g_rmsf..
Also I want to see the rmsf of certain residues .. for which I created
the .ndx file containint those residues only .. and after using g_rmsf
with index file gives the RMSF for whole protein backbone and not for
that index file residues ... what shall I do to have RMSF of index file
residues ??
The default output of g_rmsf is a plot of RMSF (of each residue) vs. residue.
No index file is required to obtain this, unless you want to do the fitting to
some custom group. Is this not what you want?
-Justin
--
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com>
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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