Thanks a lot.
Valerio
"Justin A. Lemkul" <jalem...@vt.edu> ha scritto:
vferra...@units.it wrote:
Dear all,
I want to calculate the C-alfa fluctuation of a protein during a
trajectory with g_rmsf but I have just one question about the
otput: which is the difference using -o output and -od output? So
what is the difference between fluctuation and deviation?
http://en.wikipedia.org/wiki/Root_mean_square_fluctuation
http://en.wikipedia.org/wiki/Root_mean_square_deviation
Other information in MD textbooks may be useful.
-Justin
Thanks a lot in advance.
Valerio
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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