dear mohana, please refer to this page <http://wwwuser.gwdg.de/%7Eggroenh/membed.html>, to this article <http://onlinelibrary.wiley.com/doi/10.1002/jcc.21507/pdf>(g_membed: Efficient Insertion of a Membrane Protein into an Equilibrated Lipid Bilayer with Minimal Perturbation) or to this manual<http://wwwuser.gwdg.de/%7Eggroenh/submitted/Membed_rev.pdf>, that apparently compiles both the page and the article.
good luck, Igor Marques On Wed, Mar 16, 2011 at 4:51 AM, Mohana lakshmi <mohana...@yahoo.in> wrote: > Dear all.. > > I am using g_membed tools to embed the protein into lipid membrane. I read > that before doing g_membed we need to run a short run with some options in > .mdp files. > what are the steps do we need to do before g_membed. It is given that box > size should be taken from the membrane strucuture file but i don t know how > and where to mention the size? > Whether any tutorial is available for transmembrane protein using g_membed > tool? > > Thank you > > Mohanalakshmi N. > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists