On 1/04/2011 11:01 AM, parichita parichita wrote:
Hi...
I am try to istalling gromacs -4.5.3 on AMD phenom II.
I am following the installtions protocols, 1 St i have installed the
fftw3.2.2,
./configure --enable-threads --enables-floats --enables-sse
That's not how you successfully configured FFTW. Two of your flags do
not work, for three separate uses of wrong words.
make
make install
then I am doing the "cmake".
cd gromacs-4.5.3
mkdir exec
cd exec
cmake ../
After cmake the make -j 6 gives me an error
"Linking C shared library libmd.so
/usr/bin/ld: /usr/local/lib/libfftw3f.a(tensor.o): relocation
R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
I have updated the
http://www.gromacs.org/Downloads/Installation_Instructions to cover this
issue.
Mark
/usr/local/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [src/mdlib/libmd.so.6] Error 1
make[1]: *** [src/mdlib/CMakeFiles/md.dir/all] Error 2
make: *** [all] Error 2"
please suggest me what I should do next...
with regards
Parichita Mazumder
Research Fellow
C/O Dr. Chaitali Mukhopadhayay
Department of Chemistry
University of Calcutta
92,A P C Road
Kolkata-700009
India.
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