On 10/04/2011 9:41 PM, mohsen ramezanpour wrote:
Dear Dr.Mark
thank you for your attention
How long is enough?
For example, when the size of error estimate reported by g_energy is
smaller than the quantity you are trying to observe. That might take
many nanoseconds in the case of observables based on fluctuations of
atomic positions. There've been lots of mailing list threads on this topic.
Mark
for example I have run 200 ps for making npt(p=1 bar) for my system
(300 nm^3)
But the pressure is oscilating so much,and I can't be sure if it has
converged or not!
of course its average is approximately 5 bar (at the end of log file)
Do you have any idea?
I know it is not any problem if a quantity is oscilating around it's
converged value.
thanks in advance for your reply
On Sun, Apr 10, 2011 at 3:09 PM, Mark Abraham <mark.abra...@anu.edu.au
<mailto:mark.abra...@anu.edu.au>> wrote:
On 10/04/2011 6:48 PM, mohsen ramezanpour wrote:
Dear All
How can I determine the converged value of a simulation?
Because the pressure has big oscilations around it's
converging value but it is difficult to determine that value.
Longer simulations on bigger systems.
Mark
--
gmx-users mailing list gmx-users@gromacs.org
<mailto:gmx-users@gromacs.org>
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the www
interface or send it to gmx-users-requ...@gromacs.org
<mailto:gmx-users-requ...@gromacs.org>.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists