You can try Rosetta for flexible peptide docking.
On 11 April 2011 15:32, Mark Abraham <mark.abra...@anu.edu.au> wrote: > Hi, >> >> I want to know how can I predict where a designed peptide will bind to my >> protein target or not using simulation ... Can anybody guide me ?? >> > > I don't think anybody has the computational resources to answer this > question with unguided MD. Docking programs are probably the way to get a > guide about what binding modes might be reasonable, but I don't know what > software might be fit for the purpose. > > Mark > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- ====================================================================== Thomas Evangelidis PhD student Biomedical Research Foundation, Academy of Athens 4 Soranou Ephessiou , 115 27 Athens, Greece email: tev...@bioacademy.gr teva...@gmail.com website: https://sites.google.com/site/thomasevangelidishomepage/
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