On 6/05/2011 5:22 PM, battis...@libero.it wrote:
Dear all,
I'm trying install do_dssp on my pc.
I followed the steps indicated in the page:
http://lists.gromacs.org/pipermail/gmx-users/2010-November/055728.html
>> 1.step-root at ab-desktop:/path-dsspcmbi.tar.gz/# tar xvzf
dsspcmbi.tar.gz
>> 2.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp#./DsspCompileGCC
>> 3.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp# cp dsspcmbi dssp
>> 4.step-root at ab-desktop:/path-dsspcmbi.tar.gz/dssp# mv dssp
/usr/local/bin
and the program work well.
Now my question:
How the program use the file that I downloaded from the web-page:
http://swift.cmbi.ru.nl/gv/dssp/ using the indicated instruction?
GROMACS doesn't. Read the DSSP documentation about what it is providing.
(I found this page from
http://www.gromacs.org/Developer_Zone/Programming_Guide/DSSP)
rsync -avz rsync://rsync.cmbi.ru.nl/dssp/ /path_to_dssp/
The link rsync://rsync.cmbi.ru.nl/dssp/ is one of the best
//database //to calculate the angle into the secondary structures and
so to define that, isn't it?
One doesn't need a database to calculate angles.
Mark
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