Hello Tsjerk, Thanks for the reply. But if I consider the ions also in the calculation group, then it is not wrong. Right?
Thanks, Anirban On Sat, May 7, 2011 at 11:59 AM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > Hey Anirban, > > I would consider the ions part of the solvent. But the procedure is right. > > Cheers, > > Tsjerk > > On May 7, 2011 7:35 AM, "Anirban Ghosh" <reach.anirban.gh...@gmail.com> > wrote: > > Hi ALL, > > I want to calculate the SASA of a protein embedded in a bilayer along with > water and ions. So while using g_sas I understand that I need to supply all > non-solvent atoms as calculation group and Protein as the output group. So I > need to make a group with Protein+Lipid+Ions as the calculation group. > Right? > Thanks a lot in advance. > > Regards, > > Anirban > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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