Du Jiangfeng (BIOCH) wrote:
Dear All, I require a CG database of POPC for coarse grained simulation. Can
anyone give some suggestions for where to find it or how to make it by
myself? PS: the structure file of POPC was from the Biocomputing, Department
of Biological Sciences, University of Calgary. Thank you in advance.
The MARTINI site has a variety of coordinate and topology files you can likely
make use of:
http://md.chem.rug.nl/cgmartini/index.php/downloads
I don't believe they have a pure POPC membrane, but they do have POPE, which can
easily be converted.
In the future, please do not respond to the entire digest, especially when
starting a new and entirely unrelated thread. It confuses the archive horribly.
It's bad enough, let's not make it any worse :)
-Justin
Jiangfeng Du, PhD Student Cardiovascular Research Institute Maastricht
Department of Biochemistry P.O. Box 616 Mobile: +31-681741859 FAX:
+31-43-3884159 6200 MD Maastricht The Netherlands
________________________________________
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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