Hello, I have a system with glucose + ionic liquids (cation + anion).
I am trying calculate distribution of cation and anion around glucose molecule using g_sdf. I want to plot distribution of cation and anion is same figure. I run the following command g_sdf -f 3.trr -s 3.tpr -n glu-emi-dmp-128-no.ndx -mode 2 -o -r I selected two atoms from glucose and 3rd and 4th groups are cation and anion respectively. All the coordinates in refmol.gro are zero. I am using gromacs version 4.0.7. Why all the coordinates in refmol.gro are zero. Thanks Nilesh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
