Hi,  I am having a problem in running replica exchange simulation over multiple 
nodes. To run the simulation for 16 replicas over two 8-core processors, I 
generated a hostfile as follows: yethiraj30 slots=8 max_slots=8  yethiraj31 
slots=8 max_slots=8
These two machines are intra-connected and I have installed openmpi Then If I 
try to run the replica exchange simulation using the following command:mpirun 
-np 16 --hostfile  hostfile  mdrun_4mpi -s topol_.tpr -multi 16 -replex 100 >& 
log_replica_test
But I find following error and mdrun does not proceed at all :
NNODES=16, MYRANK=0, HOSTNAME=yethiraj30NNODES=16, MYRANK=1, 
HOSTNAME=yethiraj30NNODES=16, MYRANK=4, HOSTNAME=yethiraj30NNODES=16, MYRANK=2, 
HOSTNAME=yethiraj30NNODES=16, MYRANK=6, HOSTNAME=yethiraj30NNODES=16, MYRANK=3, 
HOSTNAME=yethiraj30NNODES=16, MYRANK=5, HOSTNAME=yethiraj30NNODES=16, MYRANK=7, 
HOSTNAME=yethiraj30[yethiraj30][[22604,1],0][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host 
(113)[yethiraj30][[22604,1],4][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host 
(113)[yethiraj30][[22604,1],6][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host 
(113)[yethiraj30][[22604,1],1][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host
 
(113)[yethiraj30][[22604,1],3][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host 
(113)[yethiraj30][[22604,1],2][btl_tcp_endpoint.c:636:mca_btl_tcp_endpoint_complete_connect]
 connect() to 192.168.0.31 failed: No route to host (113)NNODES=16, MYRANK=10, 
HOSTNAME=yethiraj31NNODES=16, MYRANK=12, HOSTNAME=yethiraj31
I am not sure how to resolve this issue. In general, I can go from one machine 
to another without any problem using ssh. But, when I am trying to run openmpi 
over both the machines, I get this error. Any help will be appreciated.
Jagannath
-- 
gmx-users mailing list    gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to