Dear users, I was using g_covar (gmx 4.5.3) to find the eigenvalue and eigenvectors. When I used for "protein" which is actually - 3740 in number, it gave a total of 11220 eigenvalues, similarly for bacbone, c-alpha atoms, the number of eigenvalues given was not matching with the number of atoms in question. I presume that the number of eigenvalues generated should correspond to the number of atoms considered in question. But the xpm file generated corresponds with the query given ie., protein, C-alpha or backbone as expected.
Kindly clarify my doubts. Thank you With regards M. Kavyashree
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