Hi.
There is two possibilitys
1. utility written by Oliver F. Lange and Helmut Grubmüller [1] that
compites
general corelation coefficients
2. My utility that computes pearson correlation coefficients [2]
[1]
http://www.mpibpc.mpg.de/home/grubmueller/downloads/GeneralizedCorrelations/index.html
[2]
http://omrb.pnpi.spb.ru/gitweb/?p=gromacs/gromacs.git;a=shortlog;h=refs/heads/alexxy/g_correl
On Fri, 17 Jun 2011 00:48:01 -0500, E. Nihal Korkmaz wrote:
Dear all,
Is there any built in function that gives me the pairwise correlation
of the fluctuation (unit vector between two coordinates of a residue)
of residues (averaged over the input trajectory). I tried g_covar but
thats not what im looking for. The result I want should be an NxN
matrix with values ranging from -1 to 1.
Thanks in advance,
Nihal
--
Elif Nihal Korkmaz
Research Assistant
University of Wisconsin - Biophysics
Member of Qiang Cui & Thomas Record Labs
1101 University Ave, Rm. 8359
Madison, WI 53706
Phone: 608-265-3644
Email: kork...@wisc.edu [1]
Links:
------
[1] mailto:kork...@wisc.edu
--
Best Regards,
Alexey 'Alexxy' Shvetsov
Petersburg Nuclear Physics Institute, Russia
Department of Molecular and Radiation Biophysics
Gentoo Team Ru
Gentoo Linux Dev
mailto:alexx...@gmail.com
mailto:ale...@gentoo.org
mailto:ale...@omrb.pnpi.spb.ru
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