Dear Tsjerk very thanks for your useful guidance.
I now know that I should compare output of g_gyrate (containing Rg vs time) by area.xvg output file of g_sas (containing area vs time). In area.xvg output file, there are several columns: "Hydrophobic", "Hydrophilic" and "Total". for example in time, 100 ps: 100 35.9501 60.9389 96.8891 area is in nm2. from above number I understand that 35.9501 nm2 of area of protein that is accessible to solvent belongs to hydrophobic part of protein. and 60.9389 nm2 of area of protein that is accessible to solvent belongs to hydrophilic part of protein. is my understanding true? any help will highly appreciated.
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
