Dear Users, Are there any tool for superposing the trajectory structures form MD. Please correct me if I am asking any illogical question. My previous question was regarding the trjconv output pdb trajectory, is there a way to superpose all these structures?
Thank you With regards M. Kavyashree On Wed, Jun 22, 2011 at 10:52 PM, Kavyashree M <hmkv...@gmail.com> wrote: > Dear users, > > I did ED analysis for one of the trajectories, > when I visualised the trajectory along the first > five eigen vectors using g_nmtraj it does not > show much movements. It was a simulation of > 100 ns. > My doubt is when I visualise the trajectory in > pymol calculated just after simulation I could > observe large movements in certain regions. > same regions do have movements in ED > trajectory also but not as large as this. > Why is this? > > Thank you > With Regards > M. Kavyashree > > > >
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